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Publications resulting from DNA microarray experimentation conducted at the MUSC Proteogenomics Facility
| Allen DL, Bandstra ER, Harrison BC, Thorng S, Stodieck LS, Kostenuik PJ, Morony S, Lacey DL, Hammond TG, Leinwand LL, Argraves WS, Bateman TA, Barth JL. Effects of spaceflight on murine skeletal muscle gene expression. J Appl Physiol. 2009 Feb;106(2):582-95. Epub 2008 Dec 12. PMID: 19074574 |
| Hammad SM, Twal WO, Barth JL, Smith KJ, Saad AF, Virella G, Argraves WS, Lopes-Virella MF. Oxidized LDL immune complexes and oxidized LDL differentially affect the expression of genes involved with inflammation and survival in human U937 monocytic cells. Atherosclerosis. 2009 Feb;202(2):394-404. Epub 2008 May 28. PMID: 18597759 |
| Wirrig EE, Snarr BS, Chintalapudi MR, O'neal JL, Phelps AL, Barth JL, Fresco VM, Kern CB, Mjaatvedt CH, Toole BP, Hoffman S, Trusk TC, Argraves WS, Wessels A. Cartilage link protein 1 (Crtl1), an extracellular matrix component playing an important role in heart development. Dev Biol. 2007 Oct 15;310(2):291-303. Epub 2007 Aug 9. PMID: 17822691 |
| Schofield DA Westwater C, Barth JL, DiNovo AA. Development of a biosensor-biocatalyst for the detection and biodegradation of organophosphates. Applied and Environmental Microbiology. Appl Microbiol Biotechnol. 2007 Oct;76(6):1383-94. Epub 2007 Jul 31. PMID: 17665192 |
| Barth JL, Yu Y, Song W, Lu K, Dashti A, Huang Y, Argraves WS, Lyons TJ. Oxidised, glycated LDL selectively influences tissue inhibitor of metalloproteinase-3 gene expression and protein production in human retinal capillary pericytes. Diabetologia. 2007 Oct;50(10):2200-8. Epub 2007 Aug 4. PMID: 17676308 |
| Lock EA, Barth JL, Argraves SW, Schnellmann RG. Changes in gene expression in human renal proximal tubule cells exposed to low concentrations of S-(1,2-dichlorovinyl)-l-cysteine, a metabolite of trichloroethylene. Toxicol Appl Pharmacol. 2006 Oct 15;216(2):319-30. Epub 2006 Jun 8. PMID: 16844155 |
| Potter CS, Peterson RL, Barth JL, Pruett ND, Jacobs DF, Kern MJ, Argraves WS, Sundberg JP, Awgulewitsch A. Evidence that the satin hair mutant gene Foxq1 is among multiple and functionally diverse regulatory targets for Hoxc13 during hair follicle differentiation. J Biol Chem. 2006 Sep 29;281(39):29245-55. Epub 2006 Jul 10. PMID: 16835220 |
| Mikhitarian, K., Gillanders, WE., Almeida, JS., Hebert Martin R., Varela JC., Metcalf, JS., Cole, DJ. and Mitas, M. (2005). An Innovative Microarray Strategy Identifies Informative Molecular Markers for the Detection of Micrometastatic Breast Cancer. Clin Can Res 11:3697-3704. PMID: 15897566 |
| Song W, Barth JL, Yu Y, Lu K, Dashti A, Huang Y, Gittinger CK, Argraves WS, Lyons TJ. Effects of Oxidized and Glycated LDL on Gene Expression in Human Retinal Capillary Pericytes. Invest Ophthalmol Vis Sci. 2005 Aug;46(8):2974-82. PMID: 16043874 |
| Znoiko SL, Rohrer B, Lu K, Lohr HR, Crouch RK, Ma JX. Downregulation of cone-specific gene expression and degeneration of cone photoreceptors in the Rpe65-/- mouse at early ages. Invest Ophthalmol Vis Sci. 2005 Apr;46(4):1473-9. PMID: 15790918 |
| James ER, Fresco VM, Robertson LL. Glucocorticoid-induced changes in the global gene expression of lens epithelial cells. J Ocul Pharmacol Ther. 2005 Feb;21(1):11-27. PMID: 15718824 |
| Pinto FR, Cowart LA, Hannun YA, Rohrer B, Almeida JS. Local correlation of expression profiles with gene annotations - proof of concept for a general conciliatory method. Bioinformatics. 2005 Apr 1;21(7):1037-45. PMID: 15509607 |
| Rohrer B, Pinto FR, Hulse KE, Lohr HR, Zhang L, Almeida JS. Multidestructive pathways triggered in photoreceptor cell death of the rd mouse as determined through gene expression profiling. J Biol Chem. 2004 Oct 1;279(40):41903-10. PMID: 15218024 |
| Scott KK, Norris RA, Potter SS, Norrington DW, Baybo MA, Hicklin DM, Kern MJ. GeneChip microarrays facilitate identification of Protease Nexin-1 as a target gene of the Prx2 (S8) homeoprotein. DNA Cell Biol. 2003 Feb;22(2):95-105. PMID: 12713735 |
| Cowart LA, Okamoto Y, Pinto FR, Gandy JL, Almeida JS, Hannun YA. Roles for sphingolipid biosynthesis in mediation of specific programs of the heat stress response determined through gene expression profiling. J Biol Chem. 2003 Aug 8;278(32):30328-38. PMID: 12740364 |
| Argraves GL, Barth JL, Argraves WS. The MUSC DNA Microarray Database. Bioinformatics. 2003 Dec 12;19(18):2473-4. PMID: 14668234 |